PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10000.1
Common NameEDA31
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 481aa    MW: 55502.6 Da    PI: 7.9162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10000.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.8e-3088174187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+++r  ++ +++++f+qlea
  AT3G10000.1  88 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKSGR-RQDGKNYRFFRQLEA 174
                  8*************************************999*****************************98.77888********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-485148IPR001005SANT/Myb domain
PROSITE profilePS500907.09787146IPR017877Myb-like domain
PfamPF138377.9E-2088175No hitNo description
CDDcd122034.69E-1888153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010197Biological Processpolar nucleus fusion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN  60
NSNTITTIQS GGCVGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE  120
VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKSGRR QDGKNYRFFR QLEAIYGESK  180
DSVSCYNNTQ FIMTNALHSN FRASNIHNIV PHHQNPLMTN TNTQSQSLSI SNNFNSSSDL  240
DLTSSSEGNE TTKREGMHWK EKIKEFIGVH MERLIEKQDF WLEKLMKIVE DKEHQRMLRE  300
EEWRRIEAER IDKERSFWTK ERERIEARDV AVINALQYLT GRALIRPDSS SPTERINGNG  360
SDKMMADNEF ADEGNKGKMD KKQMNKKRKE KWSSHGGNHP RTKENMMIYN NQETKINDFC  420
RDDDQCHHEG YSPSNSKNAG TPSCSNAMAA STKCFPLLEG EGDQNLWEGY GLKQRKENNH  480
Q
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT3G10000
AtGenExpressAT3G10000
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304870.0AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187611.20.0embryo sac development arrest protein 31
SwissprotQ9LZS01e-145PTL_ARATH; Trihelix transcription factor PTL
TrEMBLQ700D80.0Q700D8_ARATH; At3g10000
STRINGAT3G10000.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Representative plantOGRP8402716
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gong W, et al.
    Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
    Plant Physiol., 2004. 135(2): p. 773-82
    [PMID:15208423]
  3. Brewer PB, et al.
    PETAL LOSS, a trihelix transcription factor gene, regulates perianth architecture in the Arabidopsis flower.
    Development, 2004. 131(16): p. 4035-45
    [PMID:15269176]
  4. Pagnussat GC, et al.
    Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.
    Development, 2005. 132(3): p. 603-14
    [PMID:15634699]
  5. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]